PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00591g00511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C3H
Protein Properties Length: 339aa    MW: 38689.7 Da    PI: 7.9833
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00591g00511.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-0992116126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+ C  f++ GtC+ G+ C+FaHg
  Peaxi162Scf00591g00511.1  92 YKTRMCAKFLE-GTCRNGEHCSFAHG 116
                               9**********.*************9 PP

2zf-CCCH25.72e-08153175325
                               S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                               +++C+ f+ + +C+yGd+C+F H
  Peaxi162Scf00591g00511.1 153 MKICKKFYNGEECPYGDKCNFLH 175
                               579******66************ PP

3zf-CCCH35.71.4e-11228253126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               +kt++C+ +  tG+C++ drC+FaHg
  Peaxi162Scf00591g00511.1 228 WKTKICSKWETTGQCPFRDRCHFAHG 253
                               8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-1588124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-989122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.34791118IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-491117IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-692116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-7150177IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089150178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-8153176IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6153175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-16223259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-10224259IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5227254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995227255IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSFSDPPPPL PPFMQMPFAG SGDNIGGFWP QSPINHELPE ESYSQFERAP PFKRPRNFDS  60
ISPNSAMFPP MNNSRVNPPN LPGSKGTSHI FYKTRMCAKF LEGTCRNGEH CSFAHGVEDL  120
REPPPNWQDI VREKDRGGAA GNWNDDQKII HRMKICKKFY NGEECPYGDK CNFLHERPPK  180
FKTDIPRQRE SSAISIGTTG NRSDSEQIDI SKHGNVDSDP LRIKPIYWKT KICSKWETTG  240
QCPFRDRCHF AHGHSELQVP SGRIETEMLT NSVPITPRPF YVPHVELSST NAVDNALTQE  300
EKEDKKILKW KLTKKINRIY ADWIDDLVLP NLIHSKAES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340244.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like
SwissprotQ9LT818e-84C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLM1CEA90.0M1CEA9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000655850.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-76C3H family protein